pyr0ball
0311d72e53
- Add app/db/ abstraction layer: Backend enum, DbConn wrapper, dialect helper (q() for ? vs %s paramstyle), get_conn(), tenant_id() - Auto-detect backend from DATABASE_URL; SQLite remains default when unset — no config change for local deployments - Add tenant_id column to all three logical DBs (main, context, incidents); idempotent ALTER TABLE migration runs before schema scripts on existing DBs - All INSERTs inject tenant_id; SELECTs use (tenant_id = ? OR tenant_id = '') for backward compat with pre-namespacing rows - Add docker-compose.yml with named volume turnstone_pgdata (survives rebuilds) and optional external Postgres support via DATABASE_URL override - Add scripts/migrate_sqlite_to_postgres.py — one-shot idempotent migration for existing SQLite data; ON CONFLICT DO NOTHING for safe re-runs - Fix SSH glean path in pipeline.py to use ensure_schema + get_conn (was still using raw sqlite3.connect + old _SCHEMA without tenant_id) - Fix FTS5 JOIN ambiguity: qualify repeat_count as f.repeat_count in search - Update all tests to use ensure_*_schema fixtures; add row_factory where needed - 394/394 tests passing Closes: #42 Closes: #50
454 lines
17 KiB
Python
454 lines
17 KiB
Python
"""Schema creation and idempotent migrations for all Turnstone databases.
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Three logical databases (main, context, incidents) map to:
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- SQLite: three separate .db files (avoids write-lock contention)
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- Postgres: three table-groups in one physical DB (row-level locking makes separation unnecessary)
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All ensure_* functions are idempotent: safe to call on every startup.
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"""
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from __future__ import annotations
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import logging
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import sqlite3
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from pathlib import Path
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from app.db.backend import BACKEND, Backend
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from app.db.conn import get_conn
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logger = logging.getLogger(__name__)
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# ---------------------------------------------------------------------------
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# SQLite DDL — kept as executescript strings (SQLite only)
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# ---------------------------------------------------------------------------
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_MAIN_SCHEMA_SQLITE = """
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CREATE TABLE IF NOT EXISTS log_entries (
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id TEXT NOT NULL,
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tenant_id TEXT NOT NULL DEFAULT '',
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source_id TEXT NOT NULL,
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sequence INTEGER NOT NULL,
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timestamp_raw TEXT,
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timestamp_iso TEXT,
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ingest_time TEXT NOT NULL,
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severity TEXT,
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repeat_count INTEGER DEFAULT 1,
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out_of_order INTEGER DEFAULT 0,
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matched_patterns TEXT DEFAULT '[]',
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text TEXT NOT NULL,
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PRIMARY KEY (tenant_id, id)
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);
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CREATE INDEX IF NOT EXISTS idx_source ON log_entries(source_id);
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CREATE INDEX IF NOT EXISTS idx_tenant_src ON log_entries(tenant_id, source_id);
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CREATE INDEX IF NOT EXISTS idx_timestamp ON log_entries(timestamp_iso);
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CREATE INDEX IF NOT EXISTS idx_ts_repeat ON log_entries(timestamp_iso, repeat_count);
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CREATE INDEX IF NOT EXISTS idx_severity ON log_entries(tenant_id, severity);
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CREATE INDEX IF NOT EXISTS idx_patterns ON log_entries(matched_patterns);
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CREATE TABLE IF NOT EXISTS glean_fingerprints (
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tenant_id TEXT NOT NULL DEFAULT '',
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path TEXT NOT NULL,
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mtime REAL NOT NULL,
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size INTEGER NOT NULL,
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gleaned_at TEXT NOT NULL,
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PRIMARY KEY (tenant_id, path)
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);
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CREATE TABLE IF NOT EXISTS incidents (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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label TEXT NOT NULL,
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issue_type TEXT NOT NULL DEFAULT '',
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started_at TEXT,
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ended_at TEXT,
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notes TEXT NOT NULL DEFAULT '',
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created_at TEXT NOT NULL,
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severity TEXT NOT NULL DEFAULT 'medium'
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);
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CREATE INDEX IF NOT EXISTS idx_incidents_time ON incidents(started_at, ended_at);
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CREATE INDEX IF NOT EXISTS idx_incidents_tenant ON incidents(tenant_id);
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CREATE TABLE IF NOT EXISTS received_bundles (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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source_host TEXT NOT NULL,
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issue_type TEXT NOT NULL DEFAULT '',
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label TEXT NOT NULL,
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severity TEXT NOT NULL DEFAULT 'medium',
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started_at TEXT,
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bundled_at TEXT NOT NULL,
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entry_count INTEGER NOT NULL DEFAULT 0,
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bundle_json TEXT NOT NULL
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);
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CREATE INDEX IF NOT EXISTS idx_bundles_bundled ON received_bundles(bundled_at);
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CREATE INDEX IF NOT EXISTS idx_bundles_type ON received_bundles(issue_type);
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CREATE TABLE IF NOT EXISTS sent_bundles (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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incident_id TEXT NOT NULL,
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exported_at TEXT NOT NULL,
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sanitized INTEGER NOT NULL DEFAULT 0,
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entry_count INTEGER NOT NULL DEFAULT 0,
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bundle_json TEXT NOT NULL
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);
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CREATE INDEX IF NOT EXISTS idx_sent_bundles_incident ON sent_bundles(incident_id);
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CREATE INDEX IF NOT EXISTS idx_sent_bundles_time ON sent_bundles(exported_at);
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CREATE TABLE IF NOT EXISTS blocklist_candidates (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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domain_or_ip TEXT NOT NULL,
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source_device_ip TEXT,
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source_device_name TEXT,
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first_seen TEXT NOT NULL,
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last_seen TEXT NOT NULL,
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hit_count INTEGER DEFAULT 1,
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status TEXT DEFAULT 'pending',
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pushed_at TEXT,
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log_evidence TEXT DEFAULT '[]',
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matched_rule TEXT,
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llm_score REAL,
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llm_reason TEXT
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);
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CREATE INDEX IF NOT EXISTS idx_blocklist_device ON blocklist_candidates(source_device_ip);
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CREATE INDEX IF NOT EXISTS idx_blocklist_status ON blocklist_candidates(status);
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CREATE INDEX IF NOT EXISTS idx_blocklist_domain ON blocklist_candidates(domain_or_ip);
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CREATE INDEX IF NOT EXISTS idx_blocklist_tenant ON blocklist_candidates(tenant_id);
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"""
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_CONTEXT_SCHEMA_SQLITE = """
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CREATE TABLE IF NOT EXISTS context_facts (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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category TEXT NOT NULL,
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key TEXT NOT NULL,
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value TEXT NOT NULL,
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source TEXT,
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created_at TEXT NOT NULL
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);
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CREATE INDEX IF NOT EXISTS idx_facts_category ON context_facts(category);
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CREATE INDEX IF NOT EXISTS idx_facts_key ON context_facts(key);
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CREATE INDEX IF NOT EXISTS idx_facts_tenant ON context_facts(tenant_id);
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CREATE TABLE IF NOT EXISTS context_documents (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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filename TEXT NOT NULL,
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doc_type TEXT NOT NULL,
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full_text TEXT NOT NULL,
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file_size INTEGER,
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uploaded_at TEXT NOT NULL
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);
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CREATE INDEX IF NOT EXISTS idx_docs_tenant ON context_documents(tenant_id);
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CREATE TABLE IF NOT EXISTS context_chunks (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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document_id TEXT NOT NULL REFERENCES context_documents(id) ON DELETE CASCADE,
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chunk_index INTEGER NOT NULL,
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text TEXT NOT NULL,
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embedding BLOB
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);
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CREATE INDEX IF NOT EXISTS idx_chunks_doc ON context_chunks(document_id);
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CREATE INDEX IF NOT EXISTS idx_chunks_tenant ON context_chunks(tenant_id);
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"""
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# ---------------------------------------------------------------------------
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# Postgres DDL — executed statement-by-statement
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# ---------------------------------------------------------------------------
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_MAIN_SCHEMA_PG_STMTS = [
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"""
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CREATE TABLE IF NOT EXISTS log_entries (
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id TEXT NOT NULL,
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tenant_id TEXT NOT NULL DEFAULT '',
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source_id TEXT NOT NULL,
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sequence INTEGER NOT NULL,
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timestamp_raw TEXT,
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timestamp_iso TEXT,
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ingest_time TEXT NOT NULL,
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severity TEXT,
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repeat_count INTEGER DEFAULT 1,
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out_of_order INTEGER DEFAULT 0,
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matched_patterns TEXT DEFAULT '[]',
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text TEXT NOT NULL,
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text_tsv tsvector,
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PRIMARY KEY (tenant_id, id)
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)
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""",
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"CREATE INDEX IF NOT EXISTS idx_tenant_src ON log_entries(tenant_id, source_id)",
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"CREATE INDEX IF NOT EXISTS idx_timestamp ON log_entries(timestamp_iso)",
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"CREATE INDEX IF NOT EXISTS idx_severity ON log_entries(tenant_id, severity)",
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"CREATE INDEX IF NOT EXISTS idx_patterns ON log_entries(matched_patterns)",
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"CREATE INDEX IF NOT EXISTS idx_fts_gin ON log_entries USING GIN(text_tsv)",
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"""
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CREATE OR REPLACE FUNCTION _ts_update_text_tsv() RETURNS trigger AS $$
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BEGIN
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NEW.text_tsv := to_tsvector('english', COALESCE(NEW.text, ''));
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RETURN NEW;
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END;
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$$ LANGUAGE plpgsql
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""",
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"""
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DO $$ BEGIN
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IF NOT EXISTS (
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SELECT 1 FROM pg_trigger WHERE tgname = 'trig_log_entries_tsv'
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) THEN
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CREATE TRIGGER trig_log_entries_tsv
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BEFORE INSERT OR UPDATE OF text ON log_entries
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FOR EACH ROW EXECUTE FUNCTION _ts_update_text_tsv();
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END IF;
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END $$
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""",
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"""
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CREATE TABLE IF NOT EXISTS glean_fingerprints (
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tenant_id TEXT NOT NULL DEFAULT '',
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path TEXT NOT NULL,
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mtime DOUBLE PRECISION NOT NULL,
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size BIGINT NOT NULL,
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gleaned_at TEXT NOT NULL,
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PRIMARY KEY (tenant_id, path)
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)
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""",
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"""
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CREATE TABLE IF NOT EXISTS incidents (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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label TEXT NOT NULL,
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issue_type TEXT NOT NULL DEFAULT '',
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started_at TEXT,
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ended_at TEXT,
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notes TEXT NOT NULL DEFAULT '',
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created_at TEXT NOT NULL,
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severity TEXT NOT NULL DEFAULT 'medium'
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)
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""",
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"CREATE INDEX IF NOT EXISTS idx_incidents_time ON incidents(started_at, ended_at)",
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"CREATE INDEX IF NOT EXISTS idx_incidents_tenant ON incidents(tenant_id)",
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"""
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CREATE TABLE IF NOT EXISTS received_bundles (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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source_host TEXT NOT NULL,
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issue_type TEXT NOT NULL DEFAULT '',
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label TEXT NOT NULL,
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severity TEXT NOT NULL DEFAULT 'medium',
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started_at TEXT,
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bundled_at TEXT NOT NULL,
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entry_count INTEGER NOT NULL DEFAULT 0,
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bundle_json TEXT NOT NULL
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)
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""",
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"CREATE INDEX IF NOT EXISTS idx_bundles_bundled ON received_bundles(bundled_at)",
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"CREATE INDEX IF NOT EXISTS idx_bundles_type ON received_bundles(issue_type)",
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"""
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CREATE TABLE IF NOT EXISTS sent_bundles (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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incident_id TEXT NOT NULL,
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exported_at TEXT NOT NULL,
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sanitized INTEGER NOT NULL DEFAULT 0,
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entry_count INTEGER NOT NULL DEFAULT 0,
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bundle_json TEXT NOT NULL
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)
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""",
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"CREATE INDEX IF NOT EXISTS idx_sent_bundles_incident ON sent_bundles(incident_id)",
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"CREATE INDEX IF NOT EXISTS idx_sent_bundles_time ON sent_bundles(exported_at)",
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"""
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CREATE TABLE IF NOT EXISTS blocklist_candidates (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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domain_or_ip TEXT NOT NULL,
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source_device_ip TEXT,
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source_device_name TEXT,
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first_seen TEXT NOT NULL,
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last_seen TEXT NOT NULL,
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hit_count INTEGER DEFAULT 1,
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status TEXT DEFAULT 'pending',
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pushed_at TEXT,
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log_evidence TEXT DEFAULT '[]',
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matched_rule TEXT,
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llm_score DOUBLE PRECISION,
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llm_reason TEXT
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)
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""",
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"CREATE INDEX IF NOT EXISTS idx_blocklist_device ON blocklist_candidates(source_device_ip)",
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"CREATE INDEX IF NOT EXISTS idx_blocklist_status ON blocklist_candidates(status)",
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"CREATE INDEX IF NOT EXISTS idx_blocklist_domain ON blocklist_candidates(domain_or_ip)",
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"CREATE INDEX IF NOT EXISTS idx_blocklist_tenant ON blocklist_candidates(tenant_id)",
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]
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_CONTEXT_SCHEMA_PG_STMTS = [
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"""
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CREATE TABLE IF NOT EXISTS context_facts (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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category TEXT NOT NULL,
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key TEXT NOT NULL,
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value TEXT NOT NULL,
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source TEXT,
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created_at TEXT NOT NULL
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)
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""",
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"CREATE INDEX IF NOT EXISTS idx_facts_category ON context_facts(category)",
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"CREATE INDEX IF NOT EXISTS idx_facts_key ON context_facts(key)",
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"CREATE INDEX IF NOT EXISTS idx_facts_tenant ON context_facts(tenant_id)",
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"""
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CREATE TABLE IF NOT EXISTS context_documents (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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filename TEXT NOT NULL,
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doc_type TEXT NOT NULL,
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full_text TEXT NOT NULL,
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file_size BIGINT,
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uploaded_at TEXT NOT NULL
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)
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""",
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"CREATE INDEX IF NOT EXISTS idx_docs_tenant ON context_documents(tenant_id)",
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"""
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CREATE TABLE IF NOT EXISTS context_chunks (
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id TEXT PRIMARY KEY,
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tenant_id TEXT NOT NULL DEFAULT '',
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document_id TEXT NOT NULL REFERENCES context_documents(id) ON DELETE CASCADE,
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chunk_index INTEGER NOT NULL,
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text TEXT NOT NULL,
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embedding BYTEA
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)
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""",
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"CREATE INDEX IF NOT EXISTS idx_chunks_doc ON context_chunks(document_id)",
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"CREATE INDEX IF NOT EXISTS idx_chunks_tenant ON context_chunks(tenant_id)",
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]
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# ---------------------------------------------------------------------------
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# SQLite additive column migrations — applied after CREATE TABLE on every boot
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# ---------------------------------------------------------------------------
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_MAIN_MIGRATIONS_SQLITE = [
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"ALTER TABLE log_entries ADD COLUMN tenant_id TEXT NOT NULL DEFAULT ''",
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"ALTER TABLE incidents ADD COLUMN issue_type TEXT NOT NULL DEFAULT ''",
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"ALTER TABLE incidents ADD COLUMN tenant_id TEXT NOT NULL DEFAULT ''",
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"ALTER TABLE received_bundles ADD COLUMN tenant_id TEXT NOT NULL DEFAULT ''",
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"ALTER TABLE sent_bundles ADD COLUMN tenant_id TEXT NOT NULL DEFAULT ''",
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"ALTER TABLE blocklist_candidates ADD COLUMN tenant_id TEXT NOT NULL DEFAULT ''",
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"ALTER TABLE glean_fingerprints ADD COLUMN tenant_id TEXT NOT NULL DEFAULT ''",
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"ALTER TABLE glean_fingerprints ADD COLUMN mtime REAL",
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"ALTER TABLE glean_fingerprints ADD COLUMN size INTEGER",
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"ALTER TABLE glean_fingerprints ADD COLUMN gleaned_at TEXT",
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]
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_CONTEXT_MIGRATIONS_SQLITE = [
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"ALTER TABLE context_facts ADD COLUMN tenant_id TEXT NOT NULL DEFAULT ''",
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"ALTER TABLE context_documents ADD COLUMN tenant_id TEXT NOT NULL DEFAULT ''",
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"ALTER TABLE context_chunks ADD COLUMN tenant_id TEXT NOT NULL DEFAULT ''",
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]
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def _run_sqlite_migrations(conn: sqlite3.Connection, stmts: list[str]) -> None:
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for stmt in stmts:
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try:
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conn.execute(stmt)
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except sqlite3.OperationalError:
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pass # column already exists or table not present yet — both are fine
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def _run_pg_stmts(stmts: list[str]) -> None:
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"""Execute Postgres DDL statements — each in its own transaction for IF NOT EXISTS safety."""
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from psycopg import connect as pg_connect # type: ignore[import]
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import os
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url = os.environ["DATABASE_URL"]
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with pg_connect(url, autocommit=True) as conn:
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for stmt in stmts:
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stripped = stmt.strip()
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if stripped:
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conn.execute(stripped)
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# ---------------------------------------------------------------------------
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# Public API
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# ---------------------------------------------------------------------------
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def ensure_schema(db_path: Path) -> None:
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"""Ensure main log/incidents/blocklist tables exist. Idempotent."""
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if BACKEND == Backend.POSTGRES:
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_run_pg_stmts(_MAIN_SCHEMA_PG_STMTS)
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logger.debug("Postgres main schema verified")
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return
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conn = sqlite3.connect(str(db_path), timeout=30.0)
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conn.execute("PRAGMA journal_mode=WAL")
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# Migrations first: add tenant_id to existing tables BEFORE index creation touches it
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_run_sqlite_migrations(conn, _MAIN_MIGRATIONS_SQLITE)
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conn.commit()
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conn.executescript(_MAIN_SCHEMA_SQLITE)
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conn.close()
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logger.debug("SQLite main schema verified at %s", db_path)
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def ensure_context_schema(db_path: Path) -> None:
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"""Ensure context KB tables exist. Idempotent."""
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if BACKEND == Backend.POSTGRES:
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_run_pg_stmts(_CONTEXT_SCHEMA_PG_STMTS)
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logger.debug("Postgres context schema verified")
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return
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conn = sqlite3.connect(str(db_path), timeout=30.0)
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conn.execute("PRAGMA journal_mode=WAL")
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conn.execute("PRAGMA foreign_keys=ON")
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_run_sqlite_migrations(conn, _CONTEXT_MIGRATIONS_SQLITE)
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conn.commit()
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conn.executescript(_CONTEXT_SCHEMA_SQLITE)
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conn.close()
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logger.debug("SQLite context schema verified at %s", db_path)
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def migrate_incidents_to_dedicated_db(main_db: Path, incidents_db: Path) -> int:
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"""One-shot migration: copy incidents/bundles rows from main DB to incidents DB.
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Safe to call on every startup — rows already in incidents_db are skipped.
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No-op for Postgres (single DB, no migration needed).
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"""
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if BACKEND == Backend.POSTGRES:
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return 0
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src = sqlite3.connect(str(main_db), timeout=30.0)
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src.row_factory = sqlite3.Row
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dst = sqlite3.connect(str(incidents_db), timeout=30.0)
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migrated = 0
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for table in ("incidents", "received_bundles", "sent_bundles"):
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try:
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rows = src.execute(f"SELECT * FROM {table}").fetchall() # noqa: S608
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except sqlite3.OperationalError:
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continue
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if not rows:
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continue
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cols = ", ".join(rows[0].keys())
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placeholders = ", ".join("?" * len(rows[0].keys()))
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dst.executemany(
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f"INSERT OR IGNORE INTO {table} ({cols}) VALUES ({placeholders})", # noqa: S608
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[tuple(r) for r in rows],
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)
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migrated += len(rows)
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dst.commit()
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src.close()
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dst.close()
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return migrated
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def ensure_incidents_schema(db_path: Path) -> None:
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"""Ensure incidents/bundles tables exist. Idempotent.
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For Postgres, incidents live in the same DB as log_entries (already created by
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ensure_schema), so this is a no-op — the tables were created above.
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"""
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if BACKEND == Backend.POSTGRES:
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return
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conn = sqlite3.connect(str(db_path), timeout=30.0)
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conn.execute("PRAGMA journal_mode=WAL")
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_run_sqlite_migrations(conn, _MAIN_MIGRATIONS_SQLITE)
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conn.commit()
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conn.executescript(_MAIN_SCHEMA_SQLITE)
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conn.close()
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logger.debug("SQLite incidents schema verified at %s", db_path)
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