turnstone/app/services/search.py
pyr0ball 876cfb9a63 fix: group journal sources by prefix:host stem in source health
source_ids with 3+ colon segments (e.g. muninn-journal:Muninn:ssh.service)
are now aggregated by their prefix:host key at the SQL level in both
list_sources() and stats_summary(). This collapses ~19K transient systemd
unit rows (crash-loop scope entries from Muninn) into ~24 grouped rows.

- list_sources: SQL CASE/INSTR group-by stem + unit_count field
- stats_summary: same stem grouping for dashboard source health table
- delete endpoint: LIKE-based cascade delete covers grouped stems
- SourcesView: unit_count badge (e.g. "2686 units") on grouped rows;
  delete confirmation names the unit count when deleting a group
- Bump version to v0.6.1
2026-06-02 04:35:26 -07:00

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"""FTS5-based log search with optional hybrid BM25 + vector re-ranking."""
from __future__ import annotations
import json
import logging
import re
import sqlite3
from dataclasses import dataclass
from pathlib import Path
logger = logging.getLogger(__name__)
@dataclass(frozen=True)
class SearchResult:
entry_id: str
source_id: str
sequence: int
timestamp_iso: str | None
severity: str | None
repeat_count: int
out_of_order: bool
matched_patterns: list[str]
text: str
rank: float
def build_fts_index(db_path: Path) -> None:
"""Build (or rebuild) the FTS5 index from log_entries. Safe to re-run.
Drops and recreates the table if the schema is stale (missing sequence column).
"""
conn = sqlite3.connect(str(db_path), timeout=30.0)
conn.execute("PRAGMA journal_mode=WAL")
# Check whether existing table has the sequence column; rebuild if not.
needs_rebuild = False
try:
conn.execute("SELECT sequence FROM log_fts LIMIT 0")
except sqlite3.OperationalError:
needs_rebuild = True
if needs_rebuild:
conn.execute("DROP TABLE IF EXISTS log_fts")
conn.executescript("""
CREATE VIRTUAL TABLE IF NOT EXISTS log_fts USING fts5(
text,
entry_id UNINDEXED,
source_id UNINDEXED,
sequence UNINDEXED,
severity UNINDEXED,
timestamp_iso UNINDEXED,
matched_patterns UNINDEXED,
repeat_count UNINDEXED,
out_of_order UNINDEXED,
tokenize = 'porter ascii'
);
""")
# Only insert rows not already indexed
conn.execute("""
INSERT INTO log_fts(text, entry_id, source_id, sequence, severity,
timestamp_iso, matched_patterns,
repeat_count, out_of_order)
SELECT e.text, e.id, e.source_id, e.sequence, e.severity,
e.timestamp_iso, e.matched_patterns,
e.repeat_count, e.out_of_order
FROM log_entries e
WHERE e.id NOT IN (SELECT entry_id FROM log_fts WHERE entry_id IS NOT NULL)
""")
conn.commit()
conn.close()
def _sanitize_fts_query(raw: str, or_mode: bool = False) -> str:
"""Strip FTS5 operator characters and return a safe MATCH expression.
FTS5 reserves: " * + - ( ) ^ ~ : ?
or_mode=True joins tokens with OR (any-of) instead of implicit AND (all-of).
"""
cleaned = re.sub(r"[^a-zA-Z0-9 _]", " ", raw)
tokens = cleaned.split()
if not tokens:
return '""'
return (" OR " if or_mode else " ").join(tokens)
def search(
db_path: Path,
query: str,
severity: str | None = None,
source_filter: str | None = None,
pattern_filter: str | None = None,
since: str | None = None,
until: str | None = None,
limit: int = 20,
include_repeats: bool = False,
or_mode: bool = False,
semantic: bool = False,
) -> list[SearchResult]:
"""Full-text search with optional filters. Returns results ranked by relevance.
When ``semantic=True`` and an embedding backend is configured, the BM25
candidate pool is re-ranked using hybrid scoring (BM25 + cosine similarity).
Falls back silently to pure BM25 when the embedder is unavailable.
"""
if semantic:
return _hybrid_search(
db_path, query, severity=severity, source_filter=source_filter,
pattern_filter=pattern_filter, since=since, until=until, limit=limit,
include_repeats=include_repeats, or_mode=or_mode,
)
return _bm25_search(
db_path, query, severity=severity, source_filter=source_filter,
pattern_filter=pattern_filter, since=since, until=until, limit=limit,
include_repeats=include_repeats, or_mode=or_mode,
)
def _hybrid_search(
db_path: Path,
query: str,
severity: str | None = None,
source_filter: str | None = None,
pattern_filter: str | None = None,
since: str | None = None,
until: str | None = None,
limit: int = 20,
include_repeats: bool = False,
or_mode: bool = False,
alpha: float = 0.6,
beta: float = 0.4,
) -> list[SearchResult]:
"""BM25 + vector re-ranking (late-fusion hybrid search).
Fetches an oversized BM25 candidate pool, embeds the query and each
candidate text in-process, then combines scores:
hybrid_score = alpha * bm25_normalized + beta * cosine_sim
BM25 normalization: FTS5 rank is negative (more negative = better match).
We flip the sign and divide by the pool maximum so all BM25 scores land
in (0, 1] — 1.0 for the top BM25 hit, approaching 0 for the weakest.
Falls back to pure BM25 when the embedding backend is unavailable.
"""
from app.services.embeddings import EMBEDDING_AVAILABLE, cosine_similarity, get_embedder
# Fetch a large candidate pool — 5x limit, minimum 100 entries.
pool_limit = max(limit * 5, 100)
candidates = _bm25_search(
db_path, query, severity=severity, source_filter=source_filter,
pattern_filter=pattern_filter, since=since, until=until,
limit=pool_limit, include_repeats=include_repeats, or_mode=or_mode,
)
if not candidates:
return []
if not EMBEDDING_AVAILABLE:
return candidates[:limit]
embedder = get_embedder()
if embedder is None:
return candidates[:limit]
try:
query_vec = embedder.embed(query)
candidate_vecs = embedder.embed_batch([r.text for r in candidates])
except Exception as exc:
logger.warning("Hybrid search embedding failed (%s) — falling back to BM25", exc)
return candidates[:limit]
# Normalize BM25 ranks: FTS5 rank is negative, flip and scale to [0, 1].
abs_ranks = [abs(r.rank) for r in candidates]
max_rank = max(abs_ranks) or 1.0
scored: list[tuple[float, SearchResult]] = []
for result, abs_rank, cand_vec in zip(candidates, abs_ranks, candidate_vecs):
bm25_norm = abs_rank / max_rank
cos_sim = cosine_similarity(query_vec, cand_vec)
hybrid = alpha * bm25_norm + beta * max(cos_sim, 0.0)
scored.append((hybrid, result))
scored.sort(key=lambda x: x[0], reverse=True)
return [r for _, r in scored[:limit]]
def _bm25_search(
db_path: Path,
query: str,
severity: str | None = None,
source_filter: str | None = None,
pattern_filter: str | None = None,
since: str | None = None,
until: str | None = None,
limit: int = 20,
include_repeats: bool = False,
or_mode: bool = False,
) -> list[SearchResult]:
"""Pure BM25 FTS5 search — internal helper used by both search() and _hybrid_search()."""
conn = sqlite3.connect(str(db_path), timeout=30.0)
conn.execute("PRAGMA journal_mode=WAL")
conn.row_factory = sqlite3.Row
fts_query = _sanitize_fts_query(query, or_mode=or_mode)
conditions = ["log_fts MATCH ?"]
params: list = [fts_query]
if severity:
conditions.append("severity = ?")
params.append(severity.upper())
if source_filter:
conditions.append("source_id LIKE ?")
params.append(f"%{source_filter}%")
if pattern_filter:
conditions.append("matched_patterns LIKE ?")
params.append(f'%"{pattern_filter}"%')
if since:
conditions.append("timestamp_iso >= ?")
params.append(since)
if until:
conditions.append("timestamp_iso <= ?")
params.append(until)
if not include_repeats:
conditions.append("repeat_count = 1")
where = " AND ".join(conditions)
params.append(limit)
try:
rows = conn.execute(
f"""
SELECT entry_id, source_id, sequence, timestamp_iso, severity,
repeat_count, out_of_order, matched_patterns, text, rank
FROM log_fts
WHERE {where}
ORDER BY rank
LIMIT ?
""",
params,
).fetchall()
except sqlite3.OperationalError as e:
logger.warning("FTS query failed (%s) — index may not be built yet", e)
conn.close()
return []
results = [
SearchResult(
entry_id=r["entry_id"],
source_id=r["source_id"],
sequence=r["sequence"],
timestamp_iso=r["timestamp_iso"],
severity=r["severity"],
repeat_count=r["repeat_count"],
out_of_order=bool(r["out_of_order"]),
matched_patterns=json.loads(r["matched_patterns"] or "[]"),
text=r["text"],
rank=r["rank"],
)
for r in rows
]
conn.close()
return results
def entries_in_window(
db_path: Path,
since: str | None,
until: str | None,
severity: str | None = None,
source_filter: str | None = None,
limit: int = 100,
per_source_cap: int | None = None,
) -> list[SearchResult]:
"""Return log entries within a time window using a plain SQL scan (no FTS).
Used as a fallback when keyword search returns nothing — ensures incident
detail always shows the raw log activity in the window even if no keywords match.
per_source_cap: when set, limits rows per source_id so high-volume sources
(e.g. network-syslog) don't crowd out lower-volume but more interesting ones.
Errors/warnings are ranked first within each source partition.
"""
conn = sqlite3.connect(str(db_path), timeout=30.0)
conn.execute("PRAGMA journal_mode=WAL")
conn.row_factory = sqlite3.Row
conditions: list[str] = ["repeat_count = 1"]
params: list = []
if since:
conditions.append("timestamp_iso >= ?")
params.append(since)
if until:
conditions.append("timestamp_iso <= ?")
params.append(until)
if severity:
conditions.append("severity = ?")
params.append(severity.upper())
if source_filter:
conditions.append("source_id LIKE ?")
params.append(f"%{source_filter}%")
where = " AND ".join(conditions)
if per_source_cap is not None:
# Use a window function to cap rows per source, errors/warnings first.
query = f"""
WITH ranked AS (
SELECT id as entry_id, source_id, sequence, timestamp_iso, severity,
repeat_count, out_of_order, matched_patterns, text, 0.0 as rank,
ROW_NUMBER() OVER (
PARTITION BY source_id
ORDER BY
CASE UPPER(severity)
WHEN 'CRITICAL' THEN 0
WHEN 'ERROR' THEN 1
WHEN 'WARN' THEN 2
ELSE 3
END,
timestamp_iso
) AS rn
FROM log_entries
WHERE {where}
)
SELECT entry_id, source_id, sequence, timestamp_iso, severity,
repeat_count, out_of_order, matched_patterns, text, rank
FROM ranked
WHERE rn <= ?
ORDER BY timestamp_iso ASC
LIMIT ?
"""
params.extend([per_source_cap, limit])
else:
query = f"""
SELECT id as entry_id, source_id, sequence, timestamp_iso, severity,
repeat_count, out_of_order, matched_patterns, text, 0.0 as rank
FROM log_entries
WHERE {where}
ORDER BY timestamp_iso ASC
LIMIT ?
"""
params.append(limit)
rows = conn.execute(query, params).fetchall()
conn.close()
return [
SearchResult(
entry_id=r["entry_id"],
source_id=r["source_id"],
sequence=r["sequence"],
timestamp_iso=r["timestamp_iso"],
severity=r["severity"],
repeat_count=r["repeat_count"],
out_of_order=bool(r["out_of_order"]),
matched_patterns=json.loads(r["matched_patterns"] or "[]"),
text=r["text"],
rank=r["rank"],
)
for r in rows
]
def recent_source_errors(
db_path: Path,
source_filter: str,
severity: str = "ERROR",
limit: int = 10,
since: str | None = None,
until: str | None = None,
) -> list[SearchResult]:
"""Plain-SQL scan: most recent error entries from a named source.
Bypasses FTS ranking so text content doesn't affect which errors surface.
Used by diagnose when FTS keyword search returns nothing for a known source.
"""
conn = sqlite3.connect(str(db_path), timeout=30.0)
conn.execute("PRAGMA journal_mode=WAL")
conn.row_factory = sqlite3.Row
conditions = [
"source_id LIKE ?",
"severity = ?",
"repeat_count = 1",
]
params: list = [f"%{source_filter}%", severity.upper()]
if since:
conditions.append("timestamp_iso >= ?")
params.append(since)
if until:
conditions.append("timestamp_iso <= ?")
params.append(until)
params.append(limit)
where = " AND ".join(conditions)
rows = conn.execute(
f"""
SELECT id as entry_id, source_id, sequence, timestamp_iso, severity,
repeat_count, out_of_order, matched_patterns, text, 0.0 as rank
FROM log_entries
WHERE {where}
ORDER BY timestamp_iso DESC
LIMIT ?
""",
params,
).fetchall()
conn.close()
return [
SearchResult(
entry_id=r["entry_id"],
source_id=r["source_id"],
sequence=r["sequence"],
timestamp_iso=r["timestamp_iso"],
severity=r["severity"],
repeat_count=r["repeat_count"],
out_of_order=bool(r["out_of_order"]),
matched_patterns=json.loads(r["matched_patterns"] or "[]"),
text=r["text"],
rank=r["rank"],
)
for r in rows
]
def list_sources(db_path: Path) -> list[dict]:
"""Return sources with entry counts, grouped by prefix:host stem.
source_ids with three or more colon-separated segments (e.g.
``muninn-journal:Muninn:ssh.service``) are collapsed to their first two
segments (``muninn-journal:Muninn``). Single- or two-segment IDs are
returned as-is. ``unit_count`` reports how many distinct sub-units were
merged into each row.
"""
conn = sqlite3.connect(str(db_path), timeout=30.0)
conn.execute("PRAGMA journal_mode=WAL")
rows = conn.execute("""
SELECT
CASE
WHEN INSTR(SUBSTR(source_id, INSTR(source_id, ':')+1), ':') > 0
THEN SUBSTR(source_id, 1,
INSTR(source_id, ':')
+ INSTR(SUBSTR(source_id, INSTR(source_id, ':')+1), ':')
- 1)
ELSE source_id
END AS group_id,
COUNT(DISTINCT source_id) AS unit_count,
COUNT(*) AS entry_count,
MIN(timestamp_iso) AS earliest,
MAX(timestamp_iso) AS latest,
SUM(CASE WHEN severity IN ('ERROR','CRITICAL','EMERGENCY','ALERT')
THEN 1 ELSE 0 END) AS error_count
FROM log_entries
GROUP BY group_id
ORDER BY entry_count DESC
""").fetchall()
conn.close()
return [
{
"source_id": r[0],
"unit_count": r[1],
"entry_count": r[2],
"earliest": r[3],
"latest": r[4],
"error_count": r[5],
}
for r in rows
]
def _compile_overrides(overrides: list[dict]) -> list[tuple[re.Pattern[str], str]]:
"""Return (compiled_pattern, override_severity) pairs for enabled rules."""
compiled = []
for rule in overrides:
if not rule.get("enabled", True):
continue
try:
compiled.append((re.compile(rule["pattern"], re.IGNORECASE), rule["override_severity"]))
except re.error:
pass
return compiled
def _apply_overrides(text: str, original_severity: str, rules: list[tuple[re.Pattern[str], str]]) -> str:
for pattern, new_sev in rules:
if pattern.search(text):
return new_sev
return original_severity
def stats_summary(db_path: Path, window_hours: int = 24, severity_overrides: list[dict] | None = None) -> dict:
"""Return aggregate health stats for the dashboard.
Queries plain log_entries (not FTS) so it works even before the index is built.
"""
rules = _compile_overrides(severity_overrides or [])
conn = sqlite3.connect(str(db_path), timeout=30.0)
conn.execute("PRAGMA journal_mode=WAL")
conn.row_factory = sqlite3.Row
since_expr = f"strftime('%Y-%m-%dT%H:%M:%S', 'now', '-{window_hours} hours')"
# Overall counts in window
row = conn.execute(f"""
SELECT
COUNT(*) AS total,
SUM(CASE WHEN severity = 'CRITICAL' THEN 1 ELSE 0 END) AS criticals,
SUM(CASE WHEN severity IN ('ERROR','CRITICAL','EMERGENCY','ALERT') THEN 1 ELSE 0 END) AS errors
FROM log_entries
WHERE timestamp_iso >= {since_expr}
AND repeat_count = 1
""").fetchone()
total_24h = int(row["total"] or 0)
criticals_24h = int(row["criticals"] or 0)
errors_24h = int(row["errors"] or 0)
# Per-source breakdown — grouped by prefix:host stem (same logic as list_sources).
source_rows = conn.execute(f"""
SELECT
CASE
WHEN INSTR(SUBSTR(source_id, INSTR(source_id, ':')+1), ':') > 0
THEN SUBSTR(source_id, 1,
INSTR(source_id, ':')
+ INSTR(SUBSTR(source_id, INSTR(source_id, ':')+1), ':')
- 1)
ELSE source_id
END AS group_id,
COUNT(*) AS entry_count,
SUM(CASE WHEN severity IN ('ERROR','CRITICAL','EMERGENCY','ALERT') THEN 1 ELSE 0 END) AS error_count,
MAX(timestamp_iso) AS latest
FROM log_entries
WHERE timestamp_iso >= {since_expr}
AND repeat_count = 1
GROUP BY group_id
ORDER BY error_count DESC, entry_count DESC
""").fetchall()
source_health = [
{
"source_id": r["group_id"],
"entry_count": int(r["entry_count"]),
"error_count": int(r["error_count"]),
"latest": r["latest"],
}
for r in source_rows
]
# Fetch candidate criticals (fetch more so filtering doesn't leave us with too few)
crit_rows = conn.execute("""
SELECT id as entry_id, source_id, timestamp_iso, severity, text
FROM log_entries
WHERE severity = 'CRITICAL' AND repeat_count = 1
ORDER BY timestamp_iso DESC
LIMIT 25
""").fetchall()
# Apply overrides: skip entries whose effective severity is no longer CRITICAL
suppressed = 0
recent_criticals = []
for r in crit_rows:
effective = _apply_overrides(r["text"], r["severity"], rules)
if effective == "CRITICAL":
recent_criticals.append({
"entry_id": r["entry_id"],
"source_id": r["source_id"],
"timestamp_iso": r["timestamp_iso"],
"severity": r["severity"],
"text": r["text"],
})
if len(recent_criticals) == 5:
break
else:
suppressed += 1
last_row = conn.execute("SELECT MAX(ingest_time) AS t FROM log_entries").fetchone()
last_gleaned: str | None = last_row["t"] if last_row else None
conn.close()
return {
"window_hours": window_hours,
"total_24h": total_24h,
"criticals_24h": criticals_24h,
"errors_24h": errors_24h,
"source_health": source_health,
"recent_criticals": recent_criticals,
"suppressed_criticals": suppressed,
"last_gleaned": last_gleaned,
}
def format_results(results: list[SearchResult], max_text: int = 300) -> str:
"""Format search results as readable text for LLM context."""
if not results:
return "No matching log entries found."
lines = []
for r in results:
ts = r.timestamp_iso or "no-timestamp"
sev = r.severity or "?"
src = r.source_id
flags = []
if r.repeat_count > 1:
flags.append(f"repeat×{r.repeat_count}")
if r.out_of_order:
flags.append("out-of-order")
if r.matched_patterns:
flags.append(f"[{', '.join(r.matched_patterns)}]")
flag_str = f" {' '.join(flags)}" if flags else ""
text = r.text[:max_text] + ("" if len(r.text) > max_text else "")
lines.append(f"[{ts} | {src} | {sev}{flag_str}]\n{text}")
return "\n\n".join(lines)